read1="/scratch/cmp1g20/RMS_resistance_data/ZOES_DATA/RAW_DATA/RH_HD_6/RH_HD_6_1.fq.gz"	read2="/scratch/cmp1g20/RMS_resistance_data/ZOES_DATA/RAW_DATA/RH_HD_6/RH_HD_6_2.fq.gz"	sampleID="RH_HD"
